Genomics of Gene Expression

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VALT summer of 2026
October 27, 2025
NEW Vice-President
The new ISCB Vice-President has been elected
September 2, 2025
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July: From Valencia's pool to Liverpool
August 4, 2025
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A LongTREC of Cycling: Green Science on Action​
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Research Lines

Long-reads transcriptomics

We are developing methods and software for the analysis of alternative isoform expression and its effect on the phenotype.

Integration of Multi-Omics data

We have created a wide array of tools for the analysis of multi-omics data including experimental design, removal of batch effects, simulation of datasets, integration, and visualization.

Single-cell and spatial transcriptomics

We are developing cutting edge algorithms to analyze single cell data, taking special focus on the use of long read data. This goes in combination with spatial-transcriptomics, shaping the future of the field.

Resource and community building

We want to provide scientists easy and accessible tools for their research. Thus, we have created tutorials and guidelines to work with our tools.

Our Tools

Our lab develops statistical methods and user-friendly software tools to analyze these multi-omics data. Our most current interest is the application of long reads sequencing technologies for transcriptome analysis and the integration of multi-omics data to model chromatin-metabolome regulation.

More tools
Latest News
The SpoOktober Chronicles 🎃
November 5, 2025
It looks like autumn has finally arrived after the long, hot summer. Leaves start to turn yellow, and...
VALT summer of 2026
October 27, 2025
The LongTrec doctoral network, along with the ConesaLab, have created the  the Valencia Long-Read Transcriptomics...
The new ISCB Vice-President has been elected
September 2, 2025
Years of hard work always yield their reward. As the saying goes, “you reap what you sow”....
El Conesa Lab asiste a la Asamble General de la Conexión BCB
March 31, 2025
La segunda Asamblea General de la Conexión BCB, celebrada en la sede central del CSIC en Madrid, ha sido...
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