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Genomics of Gene Expression

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Welcome to the ConesaLab website!

About us
Latest papers and news
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To Join or Not to Join... that is the question
September 4, 2026
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VALT: The birth of a new conference
July 30, 2026
i2sysbio 10 aniversario
Spring of 2026
May 26, 2026
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Squids in space
April 10, 2026
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Somebody had an instant crush with Vega
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The outreach time in ExpoCiencia
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The team in the ISMB/ECCB 2025
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Finding the DNA in our names
Research Lines

Long-reads transcriptomics

We are developing methods and software for the analysis of alternative isoform expression and its effect on the phenotype.

Integration of Multi-Omics data

We have created a wide array of tools for the analysis of multi-omics data including experimental design, removal of batch effects, simulation of datasets, integration, and visualization.

Single-cell and spatial transcriptomics

We are developing cutting edge algorithms to analyze single cell data, taking special focus on the use of long read data. This goes in combination with spatial-transcriptomics, shaping the future of the field.

Resource and community building

We want to provide scientists easy and accessible tools for their research. Thus, we have created tutorials and guidelines to work with our tools.

Our Tools

Our lab develops statistical methods and user-friendly software tools to analyze these multi-omics data. Our most current interest is the application of long reads sequencing technologies for transcriptome analysis and the integration of multi-omics data to model chromatin-metabolome regulation.

More tools
Latest News
Meet STIMA: lining up tissues, one slice at a time 🧬❤️
October 8, 2026
Meet STIMA, Victor's open-source R package that aligns spatial transcriptomics slides using only the...
To Join or Not to Join... that is the question
September 4, 2026
To join or not to join, that is the question. The question that Fabian asked himself one cold January...
VALT: The birth of a new conference
July 30, 2026
This July we have witnessed something truly marvelous, a once-in-a-lifetime spectacle: The birth of the...
Spring of 2026
May 26, 2026
What a wonderful time of the year spring is! The days get longer, the sun gets brighter, and science...
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